Last updated: 2019-02-21
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Subset Pvalb+ count matrices for each of the brain regions described in Table 1.
Generate a Pvalb+ specific expression profile based on gene signatures for each of the sub-clusters defined in Table 1. Compare profile across each dataset and determine a robust gene expression signature for Pvalb+ cells that can be utilised for later work packages.
In each study contrast the gene expression profile of Pvalb+ cells against the remaining GABAergic cell types. Provide a ranked list based on uniqueness OR prioritised gene expression in Pvalb+ cells. NOTE: presently several methods exist to define genes expressed in one cell class over another – this can be discussed further.
Repeat above in all neuronal cell classes and then all cells in dataset.
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